A Populus EST resource for plant functional genomics.
Identifieur interne : 004333 ( Main/Exploration ); précédent : 004332; suivant : 004334A Populus EST resource for plant functional genomics.
Auteurs : Fredrik Sterky [Suède] ; Rupali R. Bhalerao ; Per Unneberg ; Bo Segerman ; Peter Nilsson ; Amy M. Brunner ; Laurence Charbonnel-Campaa ; Jenny Jonsson Lindvall ; Karolina Tandre ; Steven H. Strauss ; Björn Sundberg ; Petter Gustafsson ; Mathias Uhlén ; Rishikesh P. Bhalerao ; Ove Nilsson ; Göran Sandberg ; Jan Karlsson ; Joakim Lundeberg ; Stefan JanssonSource :
- Proceedings of the National Academy of Sciences of the United States of America [ 0027-8424 ] ; 2004.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Populus, Protéines végétales.
- méthodes : Génomique.
- Génome végétal, Humains, Phylogenèse, Spécificité d'espèce, Écosystème, Étiquettes de séquences exprimées.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : Plant Proteins.
- genetics : Populus.
- methods : Genomics.
- Ecosystem, Expressed Sequence Tags, Genome, Plant, Humans, Phylogeny, Species Specificity.
Abstract
Trees present a life form of paramount importance for terrestrial ecosystems and human societies because of their ecological structure and physiological function and provision of energy and industrial materials. The genus Populus is the internationally accepted model for molecular tree biology. We have analyzed 102,019 Populus ESTs that clustered into 11,885 clusters and 12,759 singletons. We also provide >4,000 assembled full clone sequences to serve as a basis for the upcoming annotation of the Populus genome sequence. A public web-based EST database (POPULUSDB) provides digital expression profiles for 18 tissues that comprise the majority of differentiated organs. The coding content of Populus and Arabidopsis genomes shows very high similarity, indicating that differences between these annual and perennial angiosperm life forms result primarily from differences in gene regulation. The high similarity between Populus and Arabidopsis will allow studies of Populus to directly benefit from the detailed functional genomic information generated for Arabidopsis, enabling detailed insights into tree development and adaptation. These data will also valuable for functional genomic efforts in Arabidopsis.
DOI: 10.1073/pnas.0401641101
PubMed: 15353603
PubMed Central: PMC518859
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Bhalerao</name></author><author><name sortKey="Unneberg, Per" sort="Unneberg, Per" uniqKey="Unneberg P" first="Per" last="Unneberg">Per Unneberg</name></author><author><name sortKey="Segerman, Bo" sort="Segerman, Bo" uniqKey="Segerman B" first="Bo" last="Segerman">Bo Segerman</name></author><author><name sortKey="Nilsson, Peter" sort="Nilsson, Peter" uniqKey="Nilsson P" first="Peter" last="Nilsson">Peter Nilsson</name></author><author><name sortKey="Brunner, Amy M" sort="Brunner, Amy M" uniqKey="Brunner A" first="Amy M" last="Brunner">Amy M. Brunner</name></author><author><name sortKey="Charbonnel Campaa, Laurence" sort="Charbonnel Campaa, Laurence" uniqKey="Charbonnel Campaa L" first="Laurence" last="Charbonnel-Campaa">Laurence Charbonnel-Campaa</name></author><author><name sortKey="Lindvall, Jenny Jonsson" sort="Lindvall, Jenny Jonsson" uniqKey="Lindvall J" first="Jenny Jonsson" last="Lindvall">Jenny Jonsson Lindvall</name></author><author><name sortKey="Tandre, Karolina" sort="Tandre, Karolina" uniqKey="Tandre K" first="Karolina" last="Tandre">Karolina Tandre</name></author><author><name sortKey="Strauss, Steven H" sort="Strauss, Steven H" uniqKey="Strauss S" first="Steven H" last="Strauss">Steven H. Strauss</name></author><author><name sortKey="Sundberg, Bjorn" sort="Sundberg, Bjorn" uniqKey="Sundberg B" first="Björn" last="Sundberg">Björn Sundberg</name></author><author><name sortKey="Gustafsson, Petter" sort="Gustafsson, Petter" uniqKey="Gustafsson P" first="Petter" last="Gustafsson">Petter Gustafsson</name></author><author><name sortKey="Uhlen, Mathias" sort="Uhlen, Mathias" uniqKey="Uhlen M" first="Mathias" last="Uhlén">Mathias Uhlén</name></author><author><name sortKey="Bhalerao, Rishikesh P" sort="Bhalerao, Rishikesh P" uniqKey="Bhalerao R" first="Rishikesh P" last="Bhalerao">Rishikesh P. Bhalerao</name></author><author><name sortKey="Nilsson, Ove" sort="Nilsson, Ove" uniqKey="Nilsson O" first="Ove" last="Nilsson">Ove Nilsson</name></author><author><name sortKey="Sandberg, Goran" sort="Sandberg, Goran" uniqKey="Sandberg G" first="Göran" last="Sandberg">Göran Sandberg</name></author><author><name sortKey="Karlsson, Jan" sort="Karlsson, Jan" uniqKey="Karlsson J" first="Jan" last="Karlsson">Jan Karlsson</name></author><author><name sortKey="Lundeberg, Joakim" sort="Lundeberg, Joakim" uniqKey="Lundeberg J" first="Joakim" last="Lundeberg">Joakim Lundeberg</name></author><author><name sortKey="Jansson, Stefan" sort="Jansson, Stefan" uniqKey="Jansson S" first="Stefan" last="Jansson">Stefan Jansson</name></author></analytic><series><title level="j">Proceedings of the National Academy of Sciences of the United States of America</title><idno type="ISSN">0027-8424</idno><imprint><date when="2004" type="published">2004</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Ecosystem (MeSH)</term><term>Expressed Sequence Tags (MeSH)</term><term>Genome, Plant (MeSH)</term><term>Genomics (methods)</term><term>Humans (MeSH)</term><term>Phylogeny (MeSH)</term><term>Plant Proteins (genetics)</term><term>Populus (genetics)</term><term>Species Specificity (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Génome végétal (MeSH)</term><term>Génomique (méthodes)</term><term>Humains (MeSH)</term><term>Phylogenèse (MeSH)</term><term>Populus (génétique)</term><term>Protéines végétales (génétique)</term><term>Spécificité d'espèce (MeSH)</term><term>Écosystème (MeSH)</term><term>Étiquettes de séquences exprimées (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Populus</term><term>Protéines végétales</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Genomics</term></keywords><keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Génomique</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Ecosystem</term><term>Expressed Sequence Tags</term><term>Genome, Plant</term><term>Humans</term><term>Phylogeny</term><term>Species Specificity</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Génome végétal</term><term>Humains</term><term>Phylogenèse</term><term>Spécificité d'espèce</term><term>Écosystème</term><term>Étiquettes de séquences exprimées</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Trees present a life form of paramount importance for terrestrial ecosystems and human societies because of their ecological structure and physiological function and provision of energy and industrial materials. The genus Populus is the internationally accepted model for molecular tree biology. We have analyzed 102,019 Populus ESTs that clustered into 11,885 clusters and 12,759 singletons. We also provide >4,000 assembled full clone sequences to serve as a basis for the upcoming annotation of the Populus genome sequence. A public web-based EST database (POPULUSDB) provides digital expression profiles for 18 tissues that comprise the majority of differentiated organs. The coding content of Populus and Arabidopsis genomes shows very high similarity, indicating that differences between these annual and perennial angiosperm life forms result primarily from differences in gene regulation. The high similarity between Populus and Arabidopsis will allow studies of Populus to directly benefit from the detailed functional genomic information generated for Arabidopsis, enabling detailed insights into tree development and adaptation. These data will also valuable for functional genomic efforts in Arabidopsis.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">15353603</PMID><DateCompleted><Year>2004</Year><Month>12</Month><Day>03</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0027-8424</ISSN><JournalIssue CitedMedium="Print"><Volume>101</Volume><Issue>38</Issue><PubDate><Year>2004</Year><Month>Sep</Month><Day>21</Day></PubDate></JournalIssue><Title>Proceedings of the National Academy of Sciences of the United States of America</Title><ISOAbbreviation>Proc Natl Acad Sci U S A</ISOAbbreviation></Journal><ArticleTitle>A Populus EST resource for plant functional genomics.</ArticleTitle><Pagination><MedlinePgn>13951-6</MedlinePgn></Pagination><Abstract><AbstractText>Trees present a life form of paramount importance for terrestrial ecosystems and human societies because of their ecological structure and physiological function and provision of energy and industrial materials. The genus Populus is the internationally accepted model for molecular tree biology. We have analyzed 102,019 Populus ESTs that clustered into 11,885 clusters and 12,759 singletons. We also provide >4,000 assembled full clone sequences to serve as a basis for the upcoming annotation of the Populus genome sequence. A public web-based EST database (POPULUSDB) provides digital expression profiles for 18 tissues that comprise the majority of differentiated organs. The coding content of Populus and Arabidopsis genomes shows very high similarity, indicating that differences between these annual and perennial angiosperm life forms result primarily from differences in gene regulation. The high similarity between Populus and Arabidopsis will allow studies of Populus to directly benefit from the detailed functional genomic information generated for Arabidopsis, enabling detailed insights into tree development and adaptation. These data will also valuable for functional genomic efforts in Arabidopsis.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Sterky</LastName><ForeName>Fredrik</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Department of Biotechnology, Kungliga Tekniska Högskolan Royal Institute of Technology, AlbaNova University Center, SE-106 91 Stockholm, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bhalerao</LastName><ForeName>Rupali R</ForeName><Initials>RR</Initials></Author><Author ValidYN="Y"><LastName>Unneberg</LastName><ForeName>Per</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Segerman</LastName><ForeName>Bo</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Nilsson</LastName><ForeName>Peter</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Brunner</LastName><ForeName>Amy M</ForeName><Initials>AM</Initials></Author><Author ValidYN="Y"><LastName>Charbonnel-Campaa</LastName><ForeName>Laurence</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Lindvall</LastName><ForeName>Jenny Jonsson</ForeName><Initials>JJ</Initials></Author><Author ValidYN="Y"><LastName>Tandre</LastName><ForeName>Karolina</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Strauss</LastName><ForeName>Steven H</ForeName><Initials>SH</Initials></Author><Author ValidYN="Y"><LastName>Sundberg</LastName><ForeName>Björn</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Gustafsson</LastName><ForeName>Petter</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Uhlén</LastName><ForeName>Mathias</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Bhalerao</LastName><ForeName>Rishikesh P</ForeName><Initials>RP</Initials></Author><Author ValidYN="Y"><LastName>Nilsson</LastName><ForeName>Ove</ForeName><Initials>O</Initials></Author><Author ValidYN="Y"><LastName>Sandberg</LastName><ForeName>Göran</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Karlsson</LastName><ForeName>Jan</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Lundeberg</LastName><ForeName>Joakim</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Jansson</LastName><ForeName>Stefan</ForeName><Initials>S</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2004</Year><Month>09</Month><Day>07</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Proc Natl Acad Sci U S A</MedlineTA><NlmUniqueID>7505876</NlmUniqueID><ISSNLinking>0027-8424</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D017753" MajorTopicYN="N">Ecosystem</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020224" MajorTopicYN="Y">Expressed Sequence Tags</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="Y">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D023281" MajorTopicYN="N">Genomics</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013045" MajorTopicYN="N">Species Specificity</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2004</Year><Month>9</Month><Day>9</Day><Hour>5</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2004</Year><Month>12</Month><Day>16</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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IdType="pubmed">9789088</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Suède</li></country></list><tree><noCountry><name sortKey="Bhalerao, Rishikesh P" sort="Bhalerao, Rishikesh P" uniqKey="Bhalerao R" first="Rishikesh P" last="Bhalerao">Rishikesh P. Bhalerao</name><name sortKey="Bhalerao, Rupali R" sort="Bhalerao, Rupali R" uniqKey="Bhalerao R" first="Rupali R" last="Bhalerao">Rupali R. Bhalerao</name><name sortKey="Brunner, Amy M" sort="Brunner, Amy M" uniqKey="Brunner A" first="Amy M" last="Brunner">Amy M. Brunner</name><name sortKey="Charbonnel Campaa, Laurence" sort="Charbonnel Campaa, Laurence" uniqKey="Charbonnel Campaa L" first="Laurence" last="Charbonnel-Campaa">Laurence Charbonnel-Campaa</name><name sortKey="Gustafsson, Petter" sort="Gustafsson, Petter" uniqKey="Gustafsson P" first="Petter" last="Gustafsson">Petter Gustafsson</name><name sortKey="Jansson, Stefan" sort="Jansson, Stefan" uniqKey="Jansson S" first="Stefan" last="Jansson">Stefan Jansson</name><name sortKey="Karlsson, Jan" sort="Karlsson, Jan" uniqKey="Karlsson J" first="Jan" last="Karlsson">Jan Karlsson</name><name sortKey="Lindvall, Jenny Jonsson" sort="Lindvall, Jenny Jonsson" uniqKey="Lindvall J" first="Jenny Jonsson" last="Lindvall">Jenny Jonsson Lindvall</name><name sortKey="Lundeberg, Joakim" sort="Lundeberg, Joakim" uniqKey="Lundeberg J" first="Joakim" last="Lundeberg">Joakim Lundeberg</name><name sortKey="Nilsson, Ove" sort="Nilsson, Ove" uniqKey="Nilsson O" first="Ove" last="Nilsson">Ove Nilsson</name><name sortKey="Nilsson, Peter" sort="Nilsson, Peter" uniqKey="Nilsson P" first="Peter" last="Nilsson">Peter Nilsson</name><name sortKey="Sandberg, Goran" sort="Sandberg, Goran" uniqKey="Sandberg G" first="Göran" last="Sandberg">Göran Sandberg</name><name sortKey="Segerman, Bo" sort="Segerman, Bo" uniqKey="Segerman B" first="Bo" last="Segerman">Bo Segerman</name><name sortKey="Strauss, Steven H" sort="Strauss, Steven H" uniqKey="Strauss S" first="Steven H" last="Strauss">Steven H. Strauss</name><name sortKey="Sundberg, Bjorn" sort="Sundberg, Bjorn" uniqKey="Sundberg B" first="Björn" last="Sundberg">Björn Sundberg</name><name sortKey="Tandre, Karolina" sort="Tandre, Karolina" uniqKey="Tandre K" first="Karolina" last="Tandre">Karolina Tandre</name><name sortKey="Uhlen, Mathias" sort="Uhlen, Mathias" uniqKey="Uhlen M" first="Mathias" last="Uhlén">Mathias Uhlén</name><name sortKey="Unneberg, Per" sort="Unneberg, Per" uniqKey="Unneberg P" first="Per" last="Unneberg">Per Unneberg</name></noCountry><country name="Suède"><noRegion><name sortKey="Sterky, Fredrik" sort="Sterky, Fredrik" uniqKey="Sterky F" first="Fredrik" last="Sterky">Fredrik Sterky</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:15353603" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |